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Bacterial community characterization of water and intestine of the shrimp Litopenaeus stylirostris in a biofloc system ArchiMer
Cardona, Emilie; Gueguen, Yannick; Magré, Kevin; Lorgeoux, Bénédicte; Piquemal, David; Pierrat, Fabien; Noguier, Florian; Saulnier, Denis.
Background Biofloc technology (BFT), a rearing method with little or no water exchange, is gaining popularity in aquaculture. In the water column, such systems develop conglomerates of microbes, algae and protozoa, together with detritus and dead organic particles. The intensive microbial community presents in these systems can be used as a pond water quality treatment system, and the microbial protein can serve as a feed additive. The current problem with BFT is the difficulty of controlling its bacterial community composition for both optimal water quality and optimal shrimp health. The main objective of the present study was to investigate microbial diversity of samples obtained from different culture environments (Biofloc technology and clear...
Tipo: Text Palavras-chave: Shrimp; Biofloc; Clear sea water; Bacterial communities; Culture environment; Microbiota.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00346/45694/45314.pdf
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Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization ArchiMer
Joubert, Caroline; Piquemal, David; Marie, Benjamin; Manchon, Laurent; Pierrat, Fabien; Zanella-cleon, Isabelle; Cochennec-laureau, Nathalie; Gueguen, Yannick; Montagnani, Caroline.
Background: The shell of the pearl-producing bivalve Pinctada margaritifera is composed of an organic cell-free matrix that plays a key role in the dynamic process of biologically-controlled biomineralization. In order to increase genomic resources and identify shell matrix proteins implicated in biomineralization in P. margaritifera, high-throughput Expressed Sequence Tag (EST) pyrosequencing was undertaken on the calcifying mantle, combined with a proteomic analysis of the shell. Results: We report the functional analysis of 276 738 sequences, leading to the constitution of an unprecedented catalog of 82 P. margaritifera biomineralization-related mantle protein sequences. Components of the current "chitin-silk fibroin gel-acidic macromolecule" model of...
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Ano: 2010 URL: http://archimer.ifremer.fr/doc/00020/13154/10202.pdf
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